Publications

CINAR Annual Progress Reports

CINAR Annual Progress Reports

2015-2016   Download PDF file (14.1 MB, 240 pages)

2014-2015   Download PDF file (68 KB, 244 pages)

2013-2014   Download PDF file (46 KB, 207 pages)

2012-2013   Download PDF file (12.0 MB, 181 pages)

2011-2012   
Download PDF file ( 27.6 MB, 162 pages )

2010-2011
   Download PDF file ( 12.2 MB, 152 pages)

2009-2010   Download PDF file (1.7 MB, 57 pages)



CINAR Publications

Fay G., J.S. Link, J. Hare. 2017. Assessing the effects of ocean acidification in the Northeast US using an end-to-end marine ecosystem model. Ecological Modeling. 347, 1-10. (http://dx.doi.org/10.1016/j.ecolmodel.2016.12.016

Benoit-Bird, K.J. and G.L. Lawson. 2016. Ecological insights from pelagic systems acquired using active acoustic techniques. Annual Review of Marine Science. 8: 463-490. (DOI:10.1146/annurev-marine-122414-034001)

Cao, J., Y. Chen, A. Richard. 2016. Improving assessment of Pandalus stocks using a seasonal, size-structured assessment model with environmental variables: Part I: Model description and application. Canadian Journal of Fisheries and Aquatic Science. Published on the web 18 August 2016, (DOI: 10.1139/cjfas-2016-0020)

Cao, J., Y. Chen, A. Richard. 2016. Improving assessment of Pandalus stocks using aseasonal, size-structured assessment model with environmental variables: Part II: Model evaluation and simulation. Canadian Journal of Fisheries and Aquatic Science. Published on the web 28 July 2016, (DOI:10.1139/cjfas-2016-0021)

Chu, D., G.L. Lawson, P.H. Wiebe. 2016. Estimation of biological parameters of marine organisms using linear and nonlinear acoustic scattering model-based inversion methods. Journal of the Acoustical Society of America, 139: 2885

Fay, G. & J. Brust. 2016. Peer review report for the Atlantic Red Drum stock assessment. Report to the Atlantic States Marine Fisheries Commission. April 2016. 14p.

Friedland, K. D., and Ji, R. 2016. Seasonal phytoplankton blooms in the North Atlantic linked to the overwintering strategies of copepods. Elementa: Science of the Anthropocene, 4, 000099. (http://doi.org/10.12952/journal.elementa.000099)

Gaichas S.K., M. Fogarty, G. DePiper, G. Fay, R. Gamble, S. Lucey, L. Smith. 2016.Combining stock, multispecies, and ecosystem level fishery objectives within an operational management procedure: simulations to start the conversation. ICES J of Mar Sci. (https://doi.org/10.1093/icesjms/fsw119)

Jones, B.T., Solow, A, Ji, R, 2016. Resource allocation for Lagrangian tracking. Journal of Atmospheric and Oceanic Technology. (http://dx.doi.org/10.1175/JTECH-D-15-0115.1)

Olsen E, G. Fay, S. Gaichas, R. Gamble, S. Lucey, J.S. Link. 2016. Ecosystem Model Skill Assessment. Yes We Can! PLoS ONE 11(1): e0146467.

Sutton, A.J., C. L. Sabine, R. A. Feely, W-J Cai, M. F. Cronin, M. J. McPhaden, J. M. Morel, J. A. Newton, J-H Noh, S. R. Olafsdottir, J. E. Salisbury, U. Send, D. C. Vandermark, R.A. Weller. 2016. Using present-day observations to detect when anthropogenic change forces surface ocean carbonate chemistry outside pre-industrial bounds. Biogeosciences Discuss., (doi:10.5194/bg-2106-104.)

van der Hoop, J.M., Corkeron, P., Kenney, J., Landry, S., Morin, D., Smith, J., Moore, M.J. 2016. Drag from fishing gear entangling North Atlantic right whales. Marine Mammal Science 32, 619-642

Yogesh G., W. Cho, M. Campbell, J. Pineda, E. Clarke, H. Singh. 2016. “Anomaly Detection in Unstructured Environments using Bayesian Nonparametric Scene Modeling”, Proceedings of the 2016 IEEE International Conference on Robotics and Automation, pg 2651-2656.

Cooper, L.W., A. Savvichev, J.M. Grebmeier. 2015. Abundance and production rates of heterotrophic bacterioplankton in the context of sediment and water column processes in the Chukchi Sea. Oceanography 28(3):84–99

Czeschel, R., L. Stramma, R.A. Weller, T. Fischer, 2015. Circulation, eddies, oxygen and nutrient changes in the eastern tropical South Pacific Ocean. Ocean Sci., 11, 455-470. (doi:10.5194/os-11-455-2015)

Denisenko, N.V., J.M. Grebmeier. 2015. Spatial patterns of bryozoan fauna biodiversity and issues of biogeographic regionalization of the Chukchi Sea. Oceanography 28(3):134–145

Denisenko, S.G., J.M. Grebmeier, L.W. Cooper. 2015. Assessing bioresources and standing stock of zoobenthos (key species, high taxa, trophic groups) in the Chukchi Sea. Oceanography 28(3):146–157

Friedland, K. D., R. T. Leaf, J. Kane, D. Tommasi, R. G. Asch, N. Rebuck, R. Ji, S. I. Large, C. Stock, V. S. Saba. 2015. Spring Bloom Dynamics and Zooplankton Biomass Response on the US Northeast Continental Shelf. Continental Shelf Research 102:47-61.

Grebmeier, JM, W Maslowski. Griffiths, S.P., and G. Fay. 2015. Including recreational fisheries data in stock assessment: implications for model performance and subsequent management strategies. Fisheries Management and Ecology. 22(3): 197-212. (DOI: 10.1111/fme.12117)

Grebmeier, J.M., B.A. Bluhm, L.W. Cooper, S. Danielson, K.R. Arrigo, A.L. Blanchard, J.T. Clark, R.H. Day, K.E. Frey, R.R. Gradinger, M. Kedra, B. Konar, K.J. Kuletz, S.H. Lee, J.R. Lovvorn, B.L. Norcross, S.R. Okkonen. 2015. Ecosystem characteristics and processes facilitating persistent macrobenthic hotspots and associated benthivory in the Pacific Arctic. Progress in Oceanography 136:92-114

Grebmeier, J.M., B.A. Bluhm, L.W. Cooper, S.G. Denisenko, K. Iken, M. Kedra, C. Serratos. 2015. Time-series benthic community composition and biomass and associated environmental characteristics in the Chukchi Sea during the RUSALCA 2004–2012 program. Oceanography 28(3):116–133

Griffiths, S.P., and G. Fay. 2015. Including recreational fisheries data in stock assessment: implications for model performance and subsequent management strategies. Fisheries Management and Ecology. 22:3,197-212. (DOI: 10.1111/fme12117)

Hoagland P., Dalton TM, Jin D, Dwyer J. 2015. An approach for assessing the spatial welfare and distributional effects of siting wind energy in the ocean: the Rhode Island/Massachusetts “Area of Mutual Interest.” Marine Policy. 58: 51-59.(DOI: 10.1016/j.marpol.2015.04.010)

Jin X., L. Yu, D. L. Jackson, G. A. Wick.  2015. An Improved Near-Surface Specific Humidity and Air Temperature Climatology for the SSM/I Satellite Period. J. Atmos. Oceanic Technol., 32 (3), 412-433. (doi:10.1175/JTECH-D-14-00080.1)

Josey, S. A., J. Grist, D. Kieke, I. Yashayaev, L. Yu. 2015: Extraordinary ocean cooling and new dense water formation in the North Atlantic. In “State of the Climate in 2014”. Bull. Amer. Meteor. Soc., 96(7), S67-S68.

Kedra M, Moritz C, Choy ES, David C, Degen R, Duerksen S, Ellingsen I, Gorska B, Moritz C, Choy ES, C. David, Degen R, Duerksen S, I. Ellingsen, B. Górska, Grebmeier JM, Kirievskaya D, van Oevelen D, Piwosz K, Samuelsen A, Węsławski JM. 2015. Status and trends in the structure of Arctic benthic food webs. olar Research 34, (http://dx.doi.org/10.3402/polar.v34.23775)

Liang, X., and L. Yu. 2015: Variations of the global net air-sea heat flux during the “hiatus” period (2001-2010). J. Climate. 29(5), 3647–3660 (DOI: http://dx.doi.org/10.1175/JCLI-D-15-0626.1)

McNamee, J., G. Fay, and S. Cadrin. 2015. Data Limited Techniques for Tier 4 Stocks: An alternative approach to setting harvest control rules using closed loop simulations for management strategy evaluation. Report to the Mid-Atlantic Fishery Management Council Scientific and Statistical Committee. July 2015. 57p.

Mills, K. E., R. Griffis, A. Haynie, G. Pecl, A. Pershing. 2015. 2015 Santos Workshop on “Moving towards climate-ready fishery systems: Regional comparisons of climate adaptation in marine fisheries.” PICES Press 23(2): 14-16.

Pisareva, M.N. R.S. Pickart, K. Iken, E.A.Ershova, J.M. Grebmeier, L.W. Cooper, B.A. Bluhm, C. Nobre, R.R. Hopcroft, H. Hu, J. Wang, C.J. Ashjian, K.N. Kosobokova, T.E. Whitledge. 2015. The Relationship Between Patterns of Benthic Fauna and Zooplankton in the Chukchi Sea and Physical Forcing. Oceanography 28(3):68–83  (doi:10.5670/oceanog.2015.58.)

Pisareva, M.N., R.S. Pickart, M.A. Spall, G.W.K. Moore. 2015 Flow of Pacific water in the western Chukchi Sea: Results from the 2009 RUSALCA expedition, Deep Sea Research Part I: Oceanographic Research Papers105: 53–73

Sathyendranath, S., R. Ji, H. I. Browman. 2015. Introduction to the Themed Section: ‘Revisiting Sverdrup’s Critical Depth Hypothesis’. ICES Journal of Marine Science, 72(6), 1892–1896. (doi:10.1093/icesjms/fsv110.)

Townsend, D.W., N.R. Pettigrew, M.A. Thomas, M.G. Neary, D.J. McGillicuddy, Jr., J. O'Donnell. 2015. Water masses and nutrient sources to the Gulf of Maine. Journal of Marine Research 73: 93–122.

Weller, R.A. 2015. Variability and Trends in Surface Meteorology and Air–Sea Fluxes at a Site off Northern Chile. J. Climate, 28, 3004–3023. (doi:10.1175/JCLI-D-14-00591.1)

Yu, L. 2015: Sea-surface salinity fronts and associated salinity-minimum zones in the tropical ocean, J. Geophys. Res. Oceans, 120, 4205–4225, (doi:10.1002/2015JC010790.)

Yu, L., X. Jin, P. W. Stackhouse, A. C. Wilber, S. A. Josey, Y. Xue, and A. Kumar. 2015. Ocean surface heat and momentum fluxes. In “State of the Climate in 2014”. Bull. Amer. Meteor. Soc. 96(7), S68-S71

Bi, H., R. Ji, H. Liu, Y.-H. Jo, J.A. 2014.  Hare Decadal Changes in Zooplankton of the Northeast U.S. Continental Shelf PLoS ONE, 9(1), e87720. (doi:10.1371/journal.pone.0087720)

Byron, C.J., A.J. Pershing, J.D. Stockwell, H. Xue, J. Kocik. 2014. Migration model of post-smolt Atlantic salmon (Salmo salar) in the Gulf of Maine. Canadian Journal of Fisheries and Aquatic Sciences. 23:3, 172-189 (DOI: 10.1111/fog.12052)

Chambers, R.C., Candelmo A.C., Habeck, E.A., Poach M.E., Wieczorek D., Cooper, K.R., Greenfield, C.E. Phelan B.A. 2014. Ocean acidification in the early life-stages of summer flounder, Paralichthys dentatus. Biogeosciences,11:1613-1626, (doi:10.5194/bg-11-1613-2014, 2014.)

Chen, K., G. Gawarkiewicz, S. Lentz, J. Bane (2014), Diagnosing the Warming of the Northeastern US Coastal Ocean in 2012: A linkage between the atmospheric jet stream variability and ocean response, Journal of Geophysical Research, VOL. 118, 218–227, (doi:10.1002/2013JC009393.)

Czeschel, R., L. Stramma, R.A. Weller, T. Fischer. 2014. Circulation, eddies, oxygen and nutrient changes in the eastern tropical South Pacific Ocean. Ocean Sciences Discussion, 11, 2205-2243

Gettings, R.M., D.W. Townsend, M.A. Thomas and L. Karp-Boss. 2014. Dynamics of late spring and summer phytoplankton communities on Georges Bank, with emphasis on diatoms, Alexandrium spp., and other dinoflagellates Deep Sea Research II, 103: 120-138.   (doi: 10.1016/j.dsr2.2013.05.012. )

Grebmeier, J.M., W. Maslowski. 2014.Chapter 1: The Pacific Arctic Region: An Introduction.In: Grebmeier JM, Maslowski W (eds) The Pacific Arctic Region: ecosystem status and trends in a rapidly changing environment. Springer, Dordrecht, p 1-16 (doi: 10.1007/978-94-017-8863-2_1)

Holte, J., Straneo, F., Farrar, J. T., R.A. Weller. 2014. Combining mooring and Argo data to estimate a heat budget for the southeast Pacific. J. Geophys. Res.,119, 11, pages 8162–8176.

Li, Y. P. Fratantoni, C. Chen, J. Hare, R. C. Beardsley, R. Ji. 2014. Spatio-temporal patterns of stratification on the Northwest Atlantic shelf. Progress in Oceanography 134:123-137

 Li, Y., R. Ji, P.F. Fratantoni, C. Chen, J.A. Hare, C S. Davis, R.C. Beardsley. 2014. Wind-induced interannual variability of sea level slope, along-shelf flow, and surface salinity on the Northwest Atlantic shelf J. Geophys. Res. Oceans, 119:4, 2462-2479. (doi: 10.1002/2013JC009385)

Llopiz, J.K., R.K. Cowen, M.J. Hauff, R. Ji, P.L. Munday, B.A. Muhling, M.A. Peck, D.E. Richardson, S. Sogard, S. Sponaugle. 2014. Early life history and fisheries oceanography: New questions in a changing world. Oceanography 27(4):26–41, (http://dx.doi.org/10.5670/oceanog.2014.84.)

Mathis, J.T., J.M. Grebmeier, D.A. Hansell, R.R. Hopcroft, D.L. Kirchman, S.H. Lee, S.B. Moran, N.R. Bates, S. VanLaningham, J.N.  Cross, W.J. Cai Chapter 9: Carbon biogeochemistry of the western Arctic: primary production, carbon export and the controls on ocean acidification.In: Grebmeier JM, Maslowski W (eds) The Pacific Arctic Region: ecosystem status and trends in a rapidly changing environment. Springer, Dordrecht, p 223-268  

McGillicuddy, D.J., Jr., D.W. Townsend, B.A. Keafer, M.A. Thomas, D.M. Anderson. 2014.  Georges Bank: A leaky incubator of Alexandrium fundyense blooms Deep-Sea Research II, 103: 163-173 (doi:10.1016/j.dsr2.2012.11.002)

McGillicuddy, D.J., Jr., M.L. Brosnahan, D.A. Couture, R. He, B.A. Keafer, J.P. Manning, J.L. Martin, C.H. Pilskaln,D.W. Townsend, D.M. Anderson. 2014. A red tide of Alexandrium fundyense in the Gulf of Maine Deep Sea Research II, 103: 174-184 (doi: http://dx.doi.org/10.1016/j.dsr2.2013.05.011)

Mechoso, C. R., R. Wood, R. Weller, C. S. Bretherton, A. D. Clarke, H. Coe, C. Fairall, J. T. Farrar, G. Feingold, R. Garreaud, C. Grados, J. McWilliams, S. P. de Szoeke, S. E. Yuter, P. Zuidema. 2014. Ocean-Cloud-Atmosphere-Land Interactions in the Southeastern Pacific: The VOCALS Program. Bull. American. Met Soc., 95:3, 357-375. (doi: 10.1175/BAMS-D-11-00246.1)

Petrik, C.M. R. Ji, C. Davis, 2014. Interannual differences in larval haddock survival: hypothesis testing with a 3D biophysical model of Georges Bank. Fisheries Oceanography, 23(6): 521-553.

Rebuck, N.D., and D.W. Townsend. 2014. Climatology and time series for dissolved nitrate in the Gulf of Maine region. Deep Sea Res. II 103: 223-237. (http://dx.doi.org/10.1016/j.dsr2.2013.09.006)

Runge, J.A., R. Ji, C. Thompson, N. Record, F. Maps, C. Chen, J. Salisbury, D. Vandemark, 2014. Persistence of Calanus finmarchicus in the western Gulf of Maine under strong environmental forcing. Journal of Plankton Research, (DOI: 10.1093/plankt/fbu098.)

Stramma, L., Weller, R. A., Czeschel, R., Bigorre, S., 2014. Eddies and an extreme water mass anomaly observed in the eastern south Pacific at the Stratus mooring. Journal of Geophysical Research- Oceans, 119 (2). pp. 1068-1083. (DOI 10.1002/2013JC009470.)

Tian, R., C. Chen, J. Qi, R. Ji, R. C. Beardsley ,C. S. Davis, 2014. Model Study of Nutrient and Phytoplankton Dynamics in the Gulf of Maine: Patterns and Drivers for Seasonal and Interannual Variability. ICES Journal of Marine Sciences, 72(2): 388-402.

Townsend, D.W., M.A. Thomas, D.J. McGillicuddy, N.R. Rebuck. 2014. Nutrients and water masses in the Gulf of Maine - Georges Bank region: Variability and importance to blooms of the toxic dinoflagellate Alexandrium fundyense. Deep Sea Res. II 103: 238-263. (http://dx.doi.org/10.1016/j.dsr2.2013.08.003)

Weller, R. A., S. Majumder, A. Tandon, 2014. Diurnal restratification events in the Southeast Pacific trade wind regime. J. Phys. Oceanogr., 44:9, 2569-2587

Yu, L.. 2014. Coherent Evidence from Aquarius and Argo on the Existence of a Shallow Low Salinity Convergence Zone beneath the Pacific ITCZ. J. Geophys. Res. Oceans, 119, (doi:10.1002/2014JC010030.)

Yu, L., and X. Jin, 2014. Insights on the OAFlux ocean surface vector wind analysis merged from scatterometers and passive microwave radiometers (1987 onward). J. Geophys. Res. Oceans, 119, 5244-5269, (doi:10.1002/2013JC009648.)

Yu, L., and X. Jin, 2014. Confidence and sensitivity study of the OAFlux multi-sensor synthesis of the global ocean-surface vector wind from 1987 onward. J. Geophys. Res. Oceans, 119, (doi:10.1002/2014JC010194.)

Yu, L., X. Jin, P.W. Stackhouse Jr., Y. Xue, A. Kumar. 2014. Global Oceans Ocean surface heat and momentum fluxes [in State of the Climate in 2013]. Bull. Amer. Meteor. Soc., 95 (7), S57-S60.

Batchelder, H., K. Daly, C. Davis, R. Ji, M. Ohman, W. Peterson, J. Runge. 2013. Climate Impacts on Zooplankton Population Dynamics in Coastal Marine Ecosystems. Oceanography, 26(4), 34–51.  (doi:10.5670/oceanog.2013.74)

Chambers, R.C., Candelmo A.C., Habeck, E.A., Poach M.E., Wieczorek D., Cooper, K.R., Greenfield, C.E., Phelan B.A. 2013. Ocean acidification in the early life-stages of summer flounder, Paralichthys dentatus. Biogeosciences, 11:1613-1626,(doi:10.5194/bg-11-1613-2014, 2014)

Chen, C., Beardsley, R. C., Cowles, G., Qi, J., Lai, Z., Gao, G., Stuebe, D., Liu, H., Xu, Q., Xue, P., Ge, J., Ji, R., Hu, S., Tian, R., Huang, H., Wu, L., Lin, H., Sun, Y., Zhao, L., 2013. An unstructured-grid, finite-volume community ocean model FVCOM user manual (3rd edition). SMAST/UMASSD Technical Report-13-0701, University of Massachusetts-Dartmouth, pp 404.

Chen, K., G. Gawarkiewicz, S. Lentz, J. Bane. 2013. Diagnosing the warming of the Northeastern US coastal ocean in 2012: A linkage between the atmospheric jet stream variability and ocean response. J. Geophys. Res. 119: 218-227(doi: 10.1002/2013JC009393)

Gettings, R.M., D.W. Townsend, M.A. Thomas, L. Karp-Boss. 2013. Dynamics of late spring and summer phytoplankton communities on Georges Bank, with emphasis on diatoms, Alexandrium spp., and other dinoflagellates. Deep Sea Research II (http://dx.doi.org/10.1016/j.dsr2.2013.05.012)

Hoagland P, Kite-Powell HL, Jin D, Solow AR. 2013. Supply-side approaches to the economic valuation of coastal and marine habitat in the Red Sea. J. King Saud Univ.-Sci. 25:217-228. (http://dx.doi.org/10.1016/j.jksus.2013.02.006.)

Jin D, Hoagland P, Wikgren B. 2013. An empirical analysis of the economic value of ocean space associated with commercial fishing. Mar Pol. 42:74-84.

Jin, X., L. Yu. 2013. Assessing high-resolution analysis of surface heat flux in the Gulf Stream region. J. Geophys. Res. Oceans, 118, 5353–5375   

Josey, S., S. Gulev,  L. Yu. 2013. Chapter 3. Exchanges through the ocean surface Ocean Circulation and Climate, 2nd Edition, 115-140pp

 Kato, S., N. G. Loeb, F. G. Rose, D. R. Doeling, D. A. Rutan, T. E. Caldwell, L, Yu, and R.A. Weller, 2013. Surface irradiances consistent with CERES-derived top-of-atmosphere shortwave and longwave irradiances. J. Climate, 26, 2719–2740. Doi: (http://dx.doi.org/10.1175/JCLI-D-12-00436.1)

Llopiz, J.K. 2013. Latitudinal and taxonomic patterns in the feeding ecologies of fish larvae: a literature synthesis. Journal of Marine Systems. 109-110: 69-77. (doi:  10.1016/j.jmarsys.2012.05.002)

McGillicuddy, D.J., Jr., M.L. Brosnahan, D.A. Couture, R. He, B.A. Keafer, J.P. Manning, J.L. Martin, C.H. Pilskaln, D.W. Townsend, D.M. Anderson. 2013. A red tide of Alexandrium fundyense in the Gulf of Maine. Deep Sea Research II. jn(http://dx.doi.org/10.1016/j.dsr2.2013.05.011)

Plueddemann, A., J. Ryder, B. Pietro, J. Smith, C. Duncombe Rae, R. Lukas, C. Nossee, J. Snyder, L. Bariteau, S.J. Park D. Hashisaka, E. Roth, C. Fumar, A. Andrews and N. Seymour, 2013. WHOI Hawaii Ocean Timeseries Station (WHOTS): WHOTS-9 2012 mooring turnaround cruise report, WHOI Tech. Rept., WHOI-2013-04, 93 pp.

Prytherch, J., J. T. Farrar, R. A. Weller. 2013. Moored surface buoy observations of the diurnal warm layer J. Geophys. Res. 118, 4553-4569 (doi: 10.1002/jgrc.20360)

Prytherch, J. J,. T. Farrar, R.A. Weller, 2013: Observations and models of the diurnal warm layer. J. Geophys. Res., 118, (doi:10.1002/jgrc.20360.)

Rebuck, N.D. and D.W. Townsend. 2013. A climatology and time series for dissolved nitrate in the Gulf of Maine region. Deep Sea Research II. (http://dx.doi.org/10.1016/j.dsr2.2013.09.006)

Song, X., and L. Yu. 2013. How much net surface heat flux should go into the Western Pacific Warm Pool? J. Geophys. Res. Oceans, 118, 3569–3585 (doi: 10.1002/jgrc.20246)

Subramanian, A. C., A. J. Miller, B. D. Cornuelle, E. Di Lorenzo, R.A. Weller, F. Straneo, 2013. A data assimilative perspective of oceanic mesocscale eddy evolution during VOCALS-Rex. Atmos. Phys. And Chem., Atmos., 13, 3329-3344, 2013 www.atmos-chem-phys.net/13/3329/2013/ (doi:10.5194/acp-13-3329-2013)

Wilkin, J., E. Hunter. 2013. An assessment of the skill of real-time models of Middle Atlantic Bight continental shelf circulation. Jf Geophysical Research - Oceans. 118:6, 2919-2933 (doi:10.1002/jgrc.20223)

Yu, L., X. Jin,P. W. Stackhouse. 2013. Global ocean surface heat fluxes  [in "State of the Climate in 2012"]. Bull. Amer.  Meteor. Soc., 94 (8), s53-56.(doi:10.1175/2013 BAMS State of  the Climate.1)

Anderson, D.M, A.D. Cembella, G.M. Hallegraeff. 2012. Progress in understanding harmful algal blooms (HABs): Paradigm shifts and new technologies for research and management. Annual Reviews in Marine Science 4: 143-176. (doi: 10.1146/annurev-marine-120308-081121)

Duennebier, F.K., R. Lukas, E.-M. Nosal, J. Aucan, R.A. Weller. 2012. Wind, waves, and acoustic background levels at Station Aloha. J. Geophys. Res. Oceans 117, C03017. (doi: 10.1029/2011JC007267)

Palamara, L., J. Manderson, J. Kohut, M. Oliver, S. Gray, J. Goff. 2012. Improving habitat models by incorporating pelagic measurements from coastal ocean observatories. Marine Ecology Progress Series 447: 15-30. (doi: 10.3354/meps09496)

Song, X., L. Yu. 2012. High latitude contribution to global variability of sensible heat flux at the air-sea interface. Journal of Climate, special collection on “CLIVAR/SeaFlux High Latitude Surface Fluxes” 25: 3515-3531. (doi: 10.1175/JCLI-D-11-00028.1)

Smith, P.C. N.R. Pettigrew, P. Yeats, D.W. Townsend,  G. Han. 2012. Regime shift in the Gulf of Maine. pp. 185-203, In: Stephenson, R.L., J.H. Annala, J.A. Runge and M. Hall-Arber, (Eds). Advancing an Ecosystem Approach in the Gulf of Maine. American Fisheries Society, Symposium 79, Bethesda, MD. 415 pp.

Todd, R.E., D.L. Rudnick, M.R. Mazloff, B.D. Cornuelle, R.E. Davis. 2012. Thermohaline structure in the California Current System: Observations and modeling of spice variance. Journal of Geophysical Research 117: C02008. (doi: 10.1029/2011JC007589)

Baumgartner, M.F. and S.E. Mussoline. 2011. A generalized baleen whale call detection and classification system. Journal of the Acoustical Society of America 129(5): 2889-2902. (doi: 10.1121/1.3562166)

Cowles, T., J. Delaney, J. Orcutt, and R.Weller. 2011. The Ocean Observatories Initiative:  Sustained ocean observations across a range of spatial scales. Marine Technology Society 44(6): 54-64. (doi: 10.4031/MTSJ.44.6.21

Cronin, M F., R.A. Weller, R.S. Lampitt, and U. Send. 2011. Ocean Reference Stations. In Earth Observation, R.B. Rustamov and S.E. Salahova (eds.), InTech, ISBN: 978-953-307-973-8. (doi: 10.5772/27423)

D'Alessandro, E.K., S. Sponaugle, J.K. Llopiz, R.K. Cowen. 2011. Larval ecology of the great barracuda, Sphyraena barracuda, and other sphyraenids in the Straits of Florida. Marine Biology 158: 2625–2638. (doi: 10.1007/s00227-011-1770-z)

Dennison, S., M.J. Moore, A.J. Fahlman, K. Touhey Moore, S. Sharp, C.T. Harry, J. Hoppe, M. Niemeyer, B. Lentell, R.S. Wells. 2011. Bubbles in live-stranded dolphins. Proceedings Royal Society B 279, 1396-1404. (doi: 10.1098/rspb.2011.1754)

Manderson, J., L. Palamara, J. Kohut, and M. Oliver. 2011. Ocean observatory data are useful for regional habitat modeling of species with different vertical habitat preferences. Marine Ecology Progress Series 438: 1–17. (doi: 10.3354/meps09308)

McGillicuddy, D.J., Jr., D.W. Townsend, R. He, B.A. Keafer, J.L. Kleindinst, Y. Li, J.P. Manning, D.G. Mountain, M.A. Thomas, D.M. Anderson. 2011. Suppression of the 2010 Alexandrium fundyense bloom by changes in physical, biological, and chemical properties of the Gulf of Maine. Limnology and Oceanography 56: 2411–2426. (doi: 10.4319/lo.2011.56.6.2411)

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Fairall, C., B. Barnier, D. Berry, M. Bourassa, E. Bradley, C. Clayson, G. de Leeuw, W. Drennan, S. Gille, S. Gulev, E. Kent, W. McGillis, G. Quartly, V. Ryabinin, S. Smith, R. Weller, M. Yelland, and H. Zhang. 2010. Observations to quantify air-sea fluxes and their role in climate variability and predictability. Proceedings of OceanObs’09: Sustained Ocean Observations and Information for Society (Vol. 2), Venice, Italy, 21-25 September 2009, Hall, J., Harrison, D.E. & Stammer, D., Eds., ESA Publication WPP-306. (doi: 10.5270/OceanObs09.cwp.20)

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Workshop Reports

Quantifying Connectivity among Populations and Communities: How do we get connected?

February 22 - 24, 2011, Linthicum Heights, MD

Steering Committee
Hongsheng Bi (UMCES), Bob Steneck(UMaine), Jason Stockwell(GMRI), Dale Haidvogel (Rutgers), Simon Thorrold (WHOI), Ed Houde (UMCES), Tom Miller (UMCES), Tom Noji (NOAA), Jon Hare (NOAA), Jason Link(NOAA)

Participant list:  Click here

Agenda : Click here

Report : Click here

Climate and Ecosystem Change in the NW Atlantic

March 1-3, 2011, Woods Hole, MA

Steering Committee
Workshop A :
Andrew Pershing (UMaine/GMRI), Fei Chai (UMaine), Charles Stock (NOAA), Ellen Mecray (NOAA)

Workshop B :
Jeffrey Runge (UMaine), Heidi Sosik (WHOI), Oscar Schofield (Rutgers), Michael Fogarty (NOAA)


Participant list: Click here

Agenda
Workshop A : Click here
Workshop B : Click here

Workshop Report: Click here

Developing a Conceptual Framework for the Contribution of the Social Sciences to Ecosystem-Based Fishery Management (EBFM)

May 2-4, 2011, Woods Hole, MA

Steering Committee
Porter Hoagland (WHOI), Bonnie McCay (Rutgers), Matt McPherson (NOAA), Eric Thunberg, (NOAA), Andy Solow (WHOI), Kevin St. Martin (Rutgers)

Participant list: Click here

Agenda: Click here

Workshop Report : Click here

Shelfbreak Ecosystem Workshop

January 07-08,2013 Warick, RI

Steering Committee

Glen Gawarkiewicz (WHOI), Gareth Lawson (WHOI), Peg Parker (CFRF), Jon Hare (NOAA), Paula Fratantoni   (NOAA)

Participant list: Click here

Agenda:  Click here

Workshop Report:Click here

Bilateral Coordination and Collaboration for Climate Service Delivery

September 10-11, 2013
University of Maine - Orono, ME


Steering Committee

Ellen Mcray (NOAA), Bill Appleby, Andrew Milliken (NOAA), Kathleen Baskin, John McPherson( NOAA) Robert Capozi, Sherry Godlewsk, Adam Fenech, Andrew Pershing, Elizabeth Hert, Martin Boulerice, Vandana Rao, Rick Fleetwood,Will A Green, Cara Patton

Participant list: Click here

Agenda:  Click here

Workshop Report: